PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676781740
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HB-other
Protein Properties Length: 347aa    MW: 38640.9 Da    PI: 4.5892
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676781740genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33.1e-09285332653
                S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
   Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                + +k  +e+Le+++++++ p+ +    + + ++L+ r+V  WF  rRa
  676781740 285 RVKKAHIETLEKVYRRSKRPTNAVVSSIVQVTNLPRRRVLKWFEDRRA 332
                567899*****************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.139277337IPR001356Homeobox domain
SuperFamilySSF466899.84E-9282337IPR009057Homeodomain-like
SMARTSM003892.9E-4283341IPR001356Homeobox domain
PfamPF000461.1E-6285333IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-8285343IPR009057Homeodomain-like
CDDcd000869.59E-6288332No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MVVALSSQGV AFRLHSPALS SSSGLSAIRT QFWNHNAALS LPLHRPSRCV IVSARGKNRK  60
GFTPSSPKRN KKKSFEKDDN EGGGEEEEDP FEALFNLLEE DLNNDKSSID DEEISEEDLD  120
ALAAELAEVL GGGDDVDGID LFGSVTADVA DDEDEDEGHD DVSEDDDDSE EDERPAKLKN  180
WQLRRLAYAL KAGRRKTSIK NLAAELCLDR AYVLELLREP PPKLLMLSAT LPDEKPPVAA  240
PENSSRDPLP VESSSAEDVV EVEPEEKGKE EAVHVMQQRW SAQKRVKKAH IETLEKVYRR  300
SKRPTNAVVS SIVQVTNLPR RRVLKWFEDR RAEDGVPDKR APYQAPV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0020170.0BT002017.1 Arabidopsis thaliana putative protein (At5g11270) mRNA, complete cds.
GenBankBT0087430.0BT008743.1 Arabidopsis thaliana At5g11270 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399629.11e-160hypothetical protein EUTSA_v10013990mg
SwissprotQ8H0V51e-142OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLV4LFB91e-160V4LFB9_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.6__1093__AT5G11270.11e-156(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.11e-80overexpressor of cationic peroxidase 3